Categories

• papers 8
• paper 8
• misc 5
• home 1
• data 2
• blog 7
• projects 5
• research 5
• team 6
• herbarium 7
• protocols 1
• protocol 1

papers

• Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
• Practical considerations for plant phylogenomics
• Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
• HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High- Throughput Sequencing Reads Using Target Enrichment
• Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
• A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta)
• Evidence for genetic erosion of a California native tree, Platanus racemosa, via recent, ongoing introgressive hybridization with an introduced ornamental species
• Evolution of niche preference in Sphagnum peat mosses

paper

• Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
• Practical considerations for plant phylogenomics
• Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
• HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High- Throughput Sequencing Reads Using Target Enrichment
• Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
• A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta)
• Evidence for genetic erosion of a California native tree, Platanus racemosa, via recent, ongoing introgressive hybridization with an introduced ornamental species
• Evolution of niche preference in Sphagnum peat mosses

misc

• Funding
• Collaborators
• Join Our Lab!
• Mossmatters- Plant Phylogenomics
• About

home

• Mossmatters- Plant Phylogenomics

data

• Disaggregation assay data visualization
• Aggregation assay data visualization

blog

• Post-doc in moss phylogenomics
• HybPiper v1.3
• Seeking Graduate Students
• Welcome to Mossmatters At Texas Tech
• Designing HybSeq Probes from a large sequence alignment
• Introducing HybPiper
• Touring a Peatland Restoration Site

projects

• Targeted Sequencing
• Phylogenomics
• Targeted Sequencing
• Probe Design
• Targeted Sequencing

research

• Targeted Sequencing
• Phylogenomics
• Targeted Sequencing
• Probe Design
• Targeted Sequencing

team

• Yanni Chen
• Herbarium Team
• Collaborators
• Darwin
• Bella
• Matt Johnson

herbarium

• Recording Stomata
• Imaging Tutorial
• imaging
• TTC000001
• Oldest Specimens
• Oldest Specimens
• Herbarium Description

protocols

• Johnson Lab Code of Conduct

protocol

• Johnson Lab Code of Conduct